PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_38345
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 163aa    MW: 18313.1 Da    PI: 11.953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_38345genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-15961255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfs...lgkfgtaeeAakaaiaarkkleg 55
                +++GVr ++ +gr++AeIrd ++    r+r +   lg+f+t+eeAa+a+++a+++l+g
  PEQU_38345  9 HFRGVRKRP-WGRYAAEIRDpWK----RTRGWlgaLGTFDTPEEAAAAYDQAARALRG 61
                69*******.**********773....3444422268*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.744969IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-27969IPR001471AP2/ERF domain
PfamPF008474.0E-9961IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-19969IPR016177DNA-binding domain
CDDcd000182.36E-16968No hitNo description
SMARTSM003806.6E-31975IPR001471AP2/ERF domain
PRINTSPR003679.2E-121021IPR001471AP2/ERF domain
PRINTSPR003679.2E-125171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MASRGGEVHF RGVRKRPWGR YAAEIRDPWK RTRGWLGALG TFDTPEEAAA AYDQAARALR  60
GPKAKTNFPS PPPPPPPPPI RLQLDLNQLP CHLRSHYALA SPPPPPPPPA PRRPPRCFSE  120
AFCNANLRRL GNRSGVFPSI STSLRHLCRR TLRRRFDFVD LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-17969260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-17969563ATERF1
3gcc_A9e-17969563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402848.12e-33PREDICTED: ethylene-responsive transcription factor 12-like
SwissprotQ94ID63e-33ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLM0T2X22e-33M0T2X2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P00240_0015e-33(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.15e-25ERF domain protein 12